VISDB Viral Integration Site DataBase

VIS ID

TVIS10013354

Fusion event

HBV-C12orf29 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

2058

Orient

+

Integrated sequence

GCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCAT| |ACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAG

Chromosome

chr12

Cytoband

q21.32

Reference genome

Start

End

88431859/88038082 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-1226-3p ; hsa-mir-181a-5p ; hsa-mir-15b-3p ; hsa-mir-4719 ; hsa-mir-8063

Nearest miRNA

hsa-let-7i/Upstream/1292933; hsa-mir-1178/Downstream/6523707;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/2253, chr12-CpG: 34/Downstream/103876

Upstream sequence

TGATAAAGCTGAAAGGGACAAAAAGTGAGTACTCTCAAAGCAAACAAACTCAAAGGAAAAACAAAAGGCAAGTGATTCTTACTAGTTTTAACGGTGAAAA

Downstream sequence

TTGTTAGGGGAAAAACATGAAAAAAACAAAATCAACTTCAAATCTTGAGTACTCATGGTGCAAAGACATAGAACTAAAATGGTTCTGAAGTATACGGTAT