Basic Information
VIS ID
TVIS10013393
Fusion event
HBV-chr7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
169
Orient
+
Integrated sequence
TCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCA| |CATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTC
Host Sequence
Chromosome
chr7
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
61982079/62521701 (Hg38)
End
61982079/62521701 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7J
Nearest miRNA
hsa-mir-1183/Upstream/5116611; hsa-mir-10399/Downstream/1099389;
Nearest TSS
ENST00000635602/Upstream/5071524; ENST00000418297/Downstream/532730;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/140804, chr7-CpG: 49/Downstream/532436
Nearby gene
ZNF733P(+769591) ;
Upstream sequence
CTTACCTGTTTTTCCCCTCCCCAACCCAGCCAAACTGGACTGAAACCTTCATAGAACGCTAATATTTCTTCCTAACAGCATCTTAGAAAATGAGTTATTC
Downstream sequence
atcttcttataaaaactagacagaatccttctcagaaactagtttgtgatgtgtgcgttcacctcacagagtttaacctttcttttgatagagcagtttt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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