VISDB Viral Integration Site DataBase

VIS ID

TVIS10013416

Fusion event

HBV-CHRM3 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1818

Orient

+

Integrated sequence

GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT

Chromosome

chr1

Cytoband

q43

Reference genome

Start

End

239896011/239732711 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-296-3p ; hsa-mir-2467-3p ; hsa-mir-6878-5p ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6760-5p ; hsa-mir-6873-5p ; hsa-mir-6856-5p ; hsa-mir-5197-3p ; hsa-mir-6758-5p ; hsa-mir-4311 ; hsa-mir-1277-5p ; hsa-mir-4776-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-466 ; hsa-mir-5011-5p ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-137 ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-670-5p ; hsa-mir-4445-5p ; hsa-mir-6766-3p ; hsa-mir-4782-3p ; hsa-mir-219a-5p ; hsa-mir-508-3p ; hsa-mir-339-5p ; hsa-mir-6079 ; hsa-mir-5186 ; hsa-mir-4522 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-6888-5p ; hsa-mir-148a-5p ; hsa-mir-4428 ; hsa-mir-8075 ; hsa-mir-4728-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2261520; hsa-mir-3123/Downstream/1399561;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/344672, chr1-CpG: 105/Downstream/264826

Upstream sequence

CTTAGATAAGTATACCTAATATCTCACTTAGATAAGTATACCTAATATCTCACTTAGATAAGTATACCTAATATCTCACTTAGATAAGTATACCTAATAT

Downstream sequence

CTCATTTAGATAAGTATACCTAATATCTCACTTAGATAAGTATACCTAATATCTCACTTAGATAAGTATACCTAATATCTCACTTAGATAAGATACCTAA