Basic Information
VIS ID
TVIS10013431
Fusion event
HBV-HECTD4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2161
Orient
+
Integrated sequence
GCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCA| |GTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGT
Host Sequence
Chromosome
chr12
Cytoband
q24.13
Reference genome
GRCh37/hg19
Start
112638765/112200961 (Hg38)
End
112638765/112200961 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
HECTD4
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-296-3p ; hsa-mir-149-5p
Nearest miRNA
hsa-let-7i/Upstream/37640; hsa-mir-1178/Downstream/494073;
Nearest TSS
ENST00000382841/Upstream/24259; ENST00000547401/Downstream/477;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/15950, chr12-CpG: 17/Downstream/180274
Upstream sequence
tgcgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTTTCAGTCCAGGCTTTTAGGTATTATAATTTGTAACTAATTGCTATT
Downstream sequence
TCATAGACAAACGAAAGAGAATTCACAATACATTTTTGAAACACATATTATAAGTAATCTTATTACTATATAAACTTGCTATGTGCTTTTCTAAGAAAAT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate