Basic Information
VIS ID
TVIS10013434
Fusion event
HBV-chr12 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1867
Orient
+
Integrated sequence
CTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTC| |AAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGA
Host Sequence
Chromosome
chr12
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
27230728/27077795 (Hg38)
End
27230728/27077795 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/1203716; hsa-let-7i/Downstream/15245905;
Nearest TSS
ENST00000382841/Upstream/31643; ENST00000434385/Downstream/4719;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/54885, chr12-CpG: 67/Downstream/166254
Nearby gene
MED21(-48046) ; C12orf71(+3262) ;
Upstream sequence
TCAACCTCAAAGGGTATGGAAAGCTTACTTTATTGTAAAGACTTGCAAAGCGCACTGCTTAAATTTTAGGGACAGGTTCATACCTGCCAAGCAGGTTTAT
Downstream sequence
AAAACACTGATGAATAAACACAAGTTTGCCAGAAATCTTACTAAAGAACAGTGCATCTTATTCAGTGTAGACAGTCTTCTAAAGTATTTTGGTTGAGTTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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