VISDB Viral Integration Site DataBase

VIS ID

TVIS10013436

Fusion event

HBV-TMCC3 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1731

Orient

-

Integrated sequence

ACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGA| |CTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACC

Chromosome

chr12

Cytoband

q22

Reference genome

Start

End

94998719/94604943 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-92a-3p ; hsa-mir-26a-5p ; hsa-mir-6864-5p ; hsa-mir-6126 ; hsa-mir-4493 ; hsa-mir-605-3p ; hsa-mir-4635 ; hsa-mir-4511 ; hsa-mir-3133 ; hsa-mir-548x-3p ; hsa-mir-5582-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac

Nearest miRNA

hsa-let-7i/Upstream/33591; hsa-mir-1178/Downstream/229455;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/144412, chr12-CpG: 90/Downstream/44832

Upstream sequence

gaaccaaggggaggaaataagcagggggcttcaatgagaagcttctgagaaggtgataattgacttagaGGCAGCTCAAAAATCTGCTGAGAGCCTAGCA

Downstream sequence

AGGAGCACATTGTATCTGCAGAAGGAAAAACTAGAATATGTATTTAGGAAACTAAAAGTTGGAGTGTCTAAAATTGAGAATGGCTAAATGGGTCATTCTA