Basic Information
VIS ID
TVIS10013440
Fusion event
HBV-chr13 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
508
Orient
-
Integrated sequence
TTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCA| |CGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCC
Host Sequence
Chromosome
chr13
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
58712007/58137873 (Hg38)
End
58712007/58137873 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA13B ; FRA13C
Nearest miRNA
hsa-mir-1297/Upstream/2963325; hsa-mir-1267/Downstream/3061925;
Nearest TSS
ENST00000623511/Upstream/502860; ENST00000615202/Downstream/27954;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/503077, chr13-CpG: 52/Downstream/2025653
Nearby gene
PCDH17(-408942) ; DIAPH3(+1527714) ;
Nearest cancer related gene
PCDH17(TSG, -408942) ;
Upstream sequence
attacactgtaagctccactagggcagagctggcctcattcacctttacattttcaatatcaagcaccgctccgggtactaatagattttcaatgtacaa
Downstream sequence
gtattgaaagaaACTTAAATGGATAAAATGTACTATATTCTTTCTGTTTTAAATTCACCTATCATATTAATAATTATCAGACCAACATTTCTACTTAGAA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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