VISDB Viral Integration Site DataBase

VIS ID

TVIS10013487

Fusion event

HBV-AGMO integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1827

Orient

-

Integrated sequence

AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAAT

Chromosome

chr7

Cytoband

p21.2

Reference genome

Start

End

15503848/15464223 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-5698 ; hsa-mir-6738-3p ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-143-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-6778-3p ; hsa-mir-6499-3p ; hsa-mir-6777-3p ; hsa-mir-483-3p ; hsa-mir-3145-5p ; hsa-mir-3680-5p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p

Nearest miRNA

hsa-mir-339/Upstream/8397178; hsa-mir-10399/Downstream/2662997;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/1472635, chr7-CpG: 17/Downstream/935274

Upstream sequence

CCCCAACCCAGCCAAACTGGACTGAAACCTTCATAGAACGCTAATATTTCTTCCTAACAGCATCTTAGAAAATGAGTTATTCAGTGGCAAGGCTGGATAT

Downstream sequence

AGGTTACCAAAGGCTTTTAGCTCATCTCTCCATAAAAACATGTAATCTTAGCTAGAGCTATTTGGTCATTTGCCATAAATAAACTAGATGCTTGGCTGCT