VISDB Viral Integration Site DataBase

VIS ID

TVIS10013513

Fusion event

HBV-KIAA1211 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

841

Orient

-

Integrated sequence

TGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCC| |TAACAAAACAAAGAGATGGGGTTACTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACACATCATACAAAAAATCAAA

Chromosome

chr4

Cytoband

q12

Reference genome

Start

End

57036284/56170118 (Hg38)

Orient

+

Location type

upstream

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-769-5p ; hsa-mir-27b-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-4635 ; hsa-mir-4729 ; hsa-mir-664a-3p ; hsa-mir-1264

Nearest miRNA

hsa-mir-12113/Upstream/3457371; hsa-mir-1243/Downstream/4752501;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/120383, chr4-CpG: 137/Downstream/143941

Upstream sequence

tttgcatcgatgttcatcagggatattggtctaaaattctcttttttttgttgtgtctctgccaggtttcggtatcaggatgatgctggcctcataaaat

Downstream sequence

ATGGAATAACATTCGAATGCCGACATCACAAACACAGAGGACCCTTCACTTCTTGGCTTGCCACTCCCTGCCTGTCACATGCCTTCTGGTTTGACTGGAG