LOC440896 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10013601
Fusion event
HBV-LOC440896 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1789
Orient
-
Integrated sequence
GACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGG| |CATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGG
Host Sequence
Chromosome
chr9
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
69195040/41121811 (Hg38)
End
69195040/41121811 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC440896
Nearest miRNA
hsa-mir-101-2/Upstream/192719; hsa-let-7a-1/Downstream/111944;
Nearest TSS
ENST00000422679/Upstream/15582; ENST00000619442/Downstream/6652;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/46869, chr9-CpG: 103/Downstream/1725
Nearby gene
LOC440896(-13999) ; FOXD4L6(+4440) ;
Upstream sequence
ggtaacacagtgaaacgccatctctactaaaaatacaaaaaattagccaggcaaggtggcgggcgcctgtagtcccagctactcgggagcctgaggcagg
Downstream sequence
gggaaacaaaaaaagaggattgaggaaatctaaaagagatataatagcccatatcaaccaaacacaatacgtaacccttattagcattctaattcaaacc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate