VISDB Viral Integration Site DataBase

VIS ID

TVIS10013664

Fusion event

HBV-ALG9 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

325

Orient

+

Integrated sequence

AGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAA| |CCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATG

Chromosome

chr11

Cytoband

q23.1

Reference genome

Start

End

111659737/111789013 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-513a-5p ; hsa-mir-130b-5p ; hsa-mir-380-3p ; hsa-mir-411-3p ; hsa-mir-4495 ; hsa-mir-379-3p ; hsa-mir-30e-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-30d-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-4266 ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-6753-5p ; hsa-mir-1911-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-1273e ; hsa-mir-4722-5p ; hsa-mir-4524a-3p ; hsa-mir-6746-5p ; hsa-mir-1247-3p ; hsa-mir-4768-3p ; hsa-mir-6165 ; hsa-mir-302f ; hsa-mir-4772-5p ; hsa-mir-5590-3p ; hsa-mir-873-5p ; hsa-mir-142-5p ; hsa-mir-624-3p ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-7-5p ; hsa-mir-3611 ; hsa-mir-4693-5p ; hsa-mir-3185 ; hsa-mir-4512 ; hsa-mir-4773 ; hsa-mir-4318 ; hsa-mir-892a ; hsa-mir-7703 ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-1292-3p ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-6070 ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-4267 ; hsa-mir-5588-3p ; hsa-mir-1273a ; hsa-mir-766-3p ; hsa-mir-7977 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-376a-5p ; hsa-mir-4766-5p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-3121-3p ; hsa-mir-3160-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-431-3p ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-7160-5p ; hsa-mir-7162-3p

Nearest miRNA

hsa-mir-10392/Upstream/275498; hsa-let-7a-2/Downstream/1661010;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/22523, chr11-CpG: 47/Downstream/89833

Upstream sequence

AGCTTCATTAATATAGTCATTGTATATTTCTGGTCAACTCAGTccttagtataacctcagggtccagtggacccaattttagttttcaactttctttttt

Downstream sequence

ttttttcccccaagagacagggtctcactattttgcccaggctggccttgaactcctgggctcaagcaatcctcctgcctcggtctcccaaactgttggg