FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10013686
Fusion event
HBV-FN1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|large S protein|
Start
2907
Orient
+
Integrated sequence
CATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGG| |ATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGG
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
216269485/215404762 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1646603; hsa-mir-1244-1/Downstream/2495751;
Upstream sequence
AAAAGATGAAACATGCCAAGAAATATTTAGATCAGTAATGATCATAACTCAAGTCCTGAAACTTGATTGAATGTCTAAGTTTTCTCTCCTCAAGGTTGTA
Downstream sequence
ACTATGTGAAAGTCAAAACCCTGGAAAAACTGAGCCAGTAAGAGATTGAGTGCTACACAAAACTTTGCCAAAACTCTGCCAGTCATGAGAAATTGTGGAA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate