Basic Information
VIS ID
TVIS10013690
Fusion event
HBV-chr5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1828
Orient
+
Integrated sequence
AGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATT
Host Sequence
Chromosome
chr5
Cytoband
q32
Reference genome
GRCh37/hg19
Start
149730402/150350839 (Hg38)
End
149730402/150350839 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/617949; hsa-mir-103a-1/Downstream/1171248;
Nearest TSS
ENST00000502646/Upstream/11532; ENST00000643812/Downstream/6800;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/47801, chr5-CpG: 54/Downstream/6630
Nearby gene
ARSI(-47877) ; TCOF1(+6800) ;
Upstream sequence
CCACAGAGGTTACCCCTTGCTTTGTGTCCCATGTTGCCTCTGTCTACCTAAGACAAGAGGACTTATGAGAACAATGTTGTGGTAGTTTAAAAACTCCTCA
Downstream sequence
cagaggcggcctttgcacttggctttgaaacataaataggaaacagtcaaacttcaaagagcaaaaaggcagttcTGTCCAAATGGTGTGAAGGGAGTGA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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