VISDB Viral Integration Site DataBase

VIS ID

TVIS10013709

Fusion event

HBV-FN1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1681

Orient

-

Integrated sequence

TGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCA| |ATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAG

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

216249401/215384678 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-10b/Upstream/1626519; hsa-mir-1244-1/Downstream/2515835;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/72269, chr2-CpG: 43/Downstream/50866

Upstream sequence

cacttatttccaccacTGATAATATGTTTGTGAATTTACAATCCTTTTATTTCCTCAGCTCTGCCGTTCCCCCTCTAGTTGTAGTATATAAACAACTTTT

Downstream sequence

TATTTGGGTTTTAGAACAAATTATATCATCTATATCTTACGTATTTTCTTGGAAAAAACAAGGGCTCCGTTGAATGGACTTGCCAAAGTTTCTTTAATTC