Fusion event
HBV-chr3 integration
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Region type
precore/core protein|
Integrated sequence
TTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCC| |TACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTG
End
55426355/55392327 (Hg38)
Nearest miRNA
hsa-let-7g/Upstream/2545775; hsa-mir-12124/Downstream/460165;
Nearest cancer related gene
Upstream sequence
atgccatcacacctgcctaatttttgtatttttggtggagtgggggtttcaccatgttggtcaggctggtctcaaactcctgacctcgtgatccgcccgc
Downstream sequence
tatgaggccagcatcatcctgataccaaagcctggcagagacacaacaaaaaaagagaattttagaccaatatccctgatgaacattgatgcaaaaatcc
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.