Basic Information
VIS ID
TVIS10013772
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1859
Orient
+
Integrated sequence
TTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCC| |TACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTG
Host Sequence
Chromosome
chr3
Cytoband
p26.1
Reference genome
GRCh37/hg19
Start
5979009/5937322 (Hg38)
End
5979009/5937322 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-4790/Upstream/687067; hsa-let-7g/Downstream/4343029;
Nearest TSS
ENST00000440867/Upstream/680561; ENST00000425894/Downstream/25520;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/748817, chr3-CpG: 71/Downstream/923814
Nearby gene
MIR4790(-687069) ; GRM7(+923793) ;
Upstream sequence
ttccctctttttctattgtttggaatagtttcagaaggagtggtaccagcttctctttgtacctctggtagaactcggctgtgaatctgcctggtcctgg
Downstream sequence
tatgaggccagaatcatcctgataccaaagcctggcagagacacaacaaaataagagaattttagaccaatatccttgatgaacattgatgcaaaaatcc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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