Basic Information
VIS ID
TVIS10013817
Fusion event
HBV-chrX integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1859
Orient
+
Integrated sequence
TTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCC| |TACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTG
Host Sequence
Chromosome
chrX
Cytoband
q12
Reference genome
GRCh37/hg19
Start
65786565/66566723 (Hg38)
End
65786565/66566723 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/547744; hsa-mir-105-1/Downstream/3456134;
Nearest TSS
ENST00000429181/Upstream/366271; ENST00000513847/Downstream/49297;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/744261, chrX-CpG: 27/Downstream/977240
Nearby gene
HEPH(-299335) ; EDA2R(+28917) ;
Nearest cancer related gene
EDA2R(TSG, +28917) ;
Upstream sequence
agggttaagggttagggttaggggttaggggttagggttggggttggggttagggttagggtagggttagggttagggttaggggttaggggttagggta
Downstream sequence
tatgaggccagcatcatcctgatatcaaagcctggaagagatacaacaaaaaaaagagaattttacaccaatatccctgatgaacatcgatgcaaaaatc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate