VISDB Viral Integration Site DataBase

VIS ID

TVIS10013834

Fusion event

HBV-DLGAP3 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1818

Orient

-

Integrated sequence

GTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATG| |CAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTT

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

35358251/34892650 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-3191-3p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-6503-3p ; hsa-mir-4698 ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-4694-3p ; hsa-mir-5681b ; hsa-mir-513b-5p ; hsa-mir-4696 ; hsa-mir-2276-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-3714 ; hsa-mir-6750-3p ; hsa-mir-4289 ; hsa-mir-4477a ; hsa-mir-496 ; hsa-mir-616-3p

Nearest miRNA

hsa-mir-12136/Upstream/222956; hsa-mir-101-1/Downstream/2268913;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/6397, chr1-CpG: 120/Downstream/36559

Upstream sequence

tcagtgcagtggctattcacaggcacaatcataacatagtgcactacaggtcaaactcttgggctaaagcaatcctactgcctccacttcccaagtggct

Downstream sequence

agggctacaggtgcccactactgtgcctacctaccaaatttaattaaaaaacaaaaaacattagagatcaaagaagctcaatgaacctaaagtaggttaa