VISDB Viral Integration Site DataBase

VIS ID

TVIS10013856

Fusion event

HBV-CTDSP2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

2612

Orient

+

Integrated sequence

GTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTA| |ATGAGAAAAGAAGATTGCAATTGATTATGCCTGCCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGA

Chromosome

chr12

Cytoband

q14.1

Reference genome

Start

End

58239701/57845918 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-375 ; hsa-mir-24-3p ; hsa-mir-615-3p ; hsa-mir-106b-5p ; hsa-mir-191-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-4779 ; hsa-mir-1207-5p ; hsa-mir-152-5p ; hsa-mir-3192-3p ; hsa-mir-4502 ; hsa-mir-4514 ; hsa-mir-4692 ; hsa-mir-4762-3p ; hsa-mir-4763-3p ; hsa-mir-6721-5p ; hsa-mir-6808-5p ; hsa-mir-6823-5p ; hsa-mir-6871-5p ; hsa-mir-6893-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1228/Upstream/21226; hsa-let-7i/Downstream/4414441;

Nearest TSS

Nearest CpG islands

chr12-CpG: 151/Target, None/Upstream, None/Downstream

Upstream sequence

CCACCGCGACCGCCCCCGCCTCCAAGAGGTGAACTTGGTCCCAAGTCCCGCCGGACGCCGTCACCGCCAGCTAGCTGCCCGAACGACCTCGGGCTTGGGG

Downstream sequence

GGGCCTGCAAGTGCTGGACTCCAGTCTCGGTTCCGTTCCACCTGGGGCTCCCTCTGTCACCTTCCTAACCCCTCCCCGCGATCCCGGGGCAGCCGCGCGC