VISDB Viral Integration Site DataBase

VIS ID

TVIS10013865

Fusion event

HBV-FARP1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|Polymerase|

Start

2336

Orient

+

Integrated sequence

GAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGA| |GACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCT

Chromosome

chr13

Cytoband

q32.2

Reference genome

Start

End

99058298/98406044 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-204-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-let-7f-5p

Nearest miRNA

hsa-mir-1297/Upstream/197444; hsa-mir-1267/Downstream/950087;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/228913, chr13-CpG: 22/Downstream/68741

Upstream sequence

ATGCCATATAAATCAAACCGGGCTCATTTTACCTAACAACAGAACCATGTTTGTTTGCTTTTTTGTAAAATGGACTACTTCAGTGAAAAATTGATTCCAC

Downstream sequence

GTAGTTCTAATAACTCTGTGACCTTGGACATTGGCTTTTTATAGACACAGCTCTTCCCACCTGCTGGTATGGACACCAGTTTGTACAGACTGTTGTCACA