VISDB Viral Integration Site DataBase

VIS ID

TVIS10013873

Fusion event

HBV-SNX29 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

400

Orient

-

Integrated sequence

CTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCA| |TCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAAC

Chromosome

chr16

Cytoband

p13.13

Reference genome

Start

End

12489872/12396015 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-7-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-377-3p ; hsa-mir-6077 ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-6128 ; hsa-mir-216b-3p

Nearest miRNA

hsa-mir-1225/Upstream/1089488; hsa-mir-11401/Downstream/324306;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/133883, chr16-CpG: 24/Downstream/172490

Upstream sequence

AATTATCATCATGCATTTGCTACAGTGCCTGGCCTTGTTATCAAGTTATGTTCCTAACGGAGGTTAGAAAGTTCCCAAATTCTTTTTCGAAGCAGCCTCC

Downstream sequence

CTGGTACTCATGTAGACACACAAAATCTCCGGGTTTACTGATCCTAATAATGCCATGTAATTAGAAGAAAAGCCTCTAAGTCAGAAGGATTGAACCACTC