VISDB Viral Integration Site DataBase

VIS ID

TVIS10013954

Fusion event

HBV-SNX13 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

2095

Orient

+

Integrated sequence

GATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAAC| |TAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAG

Chromosome

chr7

Cytoband

p21.1

Reference genome

Start

End

17868975/17829352 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-136-5p ; hsa-mir-1226-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-124-3p ; hsa-mir-506-3p

Nearest miRNA

hsa-mir-339/Upstream/10762307; hsa-mir-10399/Downstream/297868;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/529875, chr7-CpG: 82/Downstream/110799

Upstream sequence

aaggctgctgtgaacatcttgtgcatgcttttgatgggcatacacattcattttgtggagttatatagataggcaaaaaagtaattcctgggtcacagaa

Downstream sequence

AGTGGCAAGGCTGGATATATAAGAGAACTGAAACTTTCATTATTTTACACTGTACCTTGAATATATAAAATGCCAATGACAGTTGAGATTCTAAAAACAT