Basic Information
VIS ID
TVIS10013974
Fusion event
HBV-chr15 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1784
Orient
-
Integrated sequence
TCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCT| |GTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGC
Host Sequence
Chromosome
chr15
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
20310359/20105106 (Hg38)
End
20310359/20105106 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Downstream/727689;
Nearest TSS
ENST00000338912/Upstream/93937; ENST00000557528/Downstream/42847;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/30634, chr15-CpG: 47/Downstream/63235
Nearby gene
CHEK2P2(+177638) ;
Upstream sequence
gcttggctggctgggtggcttcgctggcttggctggctaggtggcttggctggcttggctgtctgggtggcttggctggcttggctggctggctgccttg
Downstream sequence
gctggcttggctggctgggtggcttgactggcttggctggctgggtggctgtctggctttgctggctgggtggcttggctggcttggctggcttgggtgg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate