Basic Information
VIS ID
TVIS10013976
Fusion event
HBV-chr17 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
789
Orient
-
Integrated sequence
ATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCC| |TTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTAAATTTTATGGGTTATGT
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
13567973/13664656 (Hg38)
End
13567973/13664656 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/121010; hsa-mir-10226/Downstream/1586971;
Nearest TSS
ENST00000595228/Upstream/62729; ENST00000580134/Downstream/244575;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/62414, chr17-CpG: 41/Downstream/404657
Nearby gene
HS3ST3A1(-62729) ; CDRT15P1(+359842) ;
Upstream sequence
aaaaaaaaattagccacgcaaggtggtggccgcctgtagtcccagctactcgggaggctgaggcaaaagaatggcgtgaacccaggaggtggagcttgca
Downstream sequence
ttgagccgagatcgcgccactgcactccagcctgggcgacaaagcgagactctgtccccccaaaaaaaaaaaatatgaggagcatagtgcctggccatca
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate