Basic Information
VIS ID
TVIS10014009
Fusion event
HBV-chr19 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1950
Orient
+
Integrated sequence
TTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTC| |TCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCAC
Host Sequence
Chromosome
chr19
Cytoband
q11
Reference genome
GRCh37/hg19
Start
27732153/27241245 (Hg38)
End
27732153/27241245 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/6841891; hsa-let-7e/Downstream/7881455;
Nearest TSS
ENST00000633603/Upstream/3094544; ENST00000588318/Downstream/399393;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3269288, chr19-CpG: 42/Downstream/552375
Nearby gene
LINC00662(+549248) ;
Upstream sequence
tattatgctagacagaagaattctcagtaacttccttgtgttgtgtgtattcaactcacagagttgaacggttctttacacagagcagatttgagacact
Downstream sequence
ctttttgtggaatttgtaagtggagatttcagccgctttgaggtcagtggtagaaaaggaaatatcttcgtataaaaactagacagaatgattctcagaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate