Basic Information
VIS ID
TVIS10014010
Fusion event
HBV-chr19 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1837
Orient
+
Integrated sequence
GGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCC| |TAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTAC
Host Sequence
Chromosome
chr19
Cytoband
q11
Reference genome
GRCh37/hg19
Start
27735568/27244660 (Hg38)
End
27735568/27244660 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/6845306; hsa-let-7e/Downstream/7878040;
Nearest TSS
ENST00000633603/Upstream/3097959; ENST00000588318/Downstream/395978;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3272703, chr19-CpG: 42/Downstream/548960
Nearby gene
LINC00662(+545833) ;
Upstream sequence
tcacttctttgtgttgtgtgtattcaactgacagagttaaaccttcctttagacagagcagatttgaaaccctccttctgtggaatttgcaagtggcgat
Downstream sequence
ttcaagcgctttaaggtcaatggcagaaaaggaaacatcttcgtttaaaaactagacaaaatcattcccagaaactgcgttgtgatgtgtgcgttcaact
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate