VISDB Viral Integration Site DataBase

VIS ID

TVIS10014071

Fusion event

HBV-STAG2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|Polymerase|

Start

1422

Orient

-

Integrated sequence

ATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCT| |TTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCAC

Chromosome

chrX

Cytoband

q25

Reference genome

Start

End

123220317/124086467 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-34a-5p ; hsa-mir-21-5p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-182-5p ; hsa-mir-181a-5p ; hsa-mir-136-5p ; hsa-mir-8081 ; hsa-mir-6869-5p ; hsa-mir-1911-5p ; hsa-mir-3651 ; hsa-mir-6865-3p ; hsa-mir-449b-3p ; hsa-mir-409-3p ; hsa-mir-409-5p

Nearest miRNA

hsa-let-7f-2/Upstream/2715414; hsa-mir-105-1/Downstream/10082911;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/125735, chrX-CpG: 42/Downstream/246368

Upstream sequence

gacgcagaggttgcagtgagctgagatcaagccactgcactccctccagcctgggcagcagagcaagacaccacctcaaaaaaaaaaaaaaGCCATTAAC

Downstream sequence

GCCTATGCTCGCACAACTATGAGTTAATATAACCCACAGATTTCTGTATCAAAGCTAACAGTTTCGATTTCTTTTCAAGGTATGTTTACTTGGAAAAGTT