Basic Information
VIS ID
TVIS10014082
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1811
Orient
-
Integrated sequence
AAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAG| |CACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATC
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
67980019/67514336 (Hg38)
End
67980019/67514336 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/885819; hsa-mir-11399/Downstream/669182;
Nearest TSS
ENST00000473358/Upstream/83921; ENST00000634424/Downstream/8011;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/83193, chr1-CpG: 138/Downstream/170894
Nearby gene
SERBP1(-83896) ; GADD45A(+170841) ;
Nearest cancer related gene
GADD45A(TSG, +170841) ;
Upstream sequence
gcgggcatcacagttctactgataggtgatgtcacccctggcagcccagctgtaaaattcctctctttgtactgtctctctttatttctcagccggctga
Downstream sequence
cacttatggaaaatagaaagaacctacgttgaaatattgggggtgggttcccccaataataaaagaccagggtctgagggccagtcttctcctgggctgt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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