TMEM212 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014158
Fusion event
HBV-TMEM212 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1792
Orient
-
Integrated sequence
CGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCAT| |AAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTG
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
171566844/171849054 (Hg38)
End
171566844/171849054 (Hg38)
Orient
+
Location type
Intronic
Target gene
TMEM212
Nearest miRNA
hsa-let-7g/Upstream/742295; hsa-mir-1224/Downstream/3520486;
Nearest TSS
ENST00000440867/Upstream/5538; ENST00000469981/Downstream/51457;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/38386, chr3-CpG: 140/Downstream/190649
Upstream sequence
tgctcctgaatgactactgggtacataacgaaatgaaggcagaaataaagatgttctttgaaaccaacgagaacaaagacaccacataccagaatctctg
Downstream sequence
CTGATTTTCTACTCTTCTCTGCCAAGAACTGGCCCTCCTTTCAGTGTGGACTCCTCactccctgctccctaagcatggcagccacttccccacctttgca
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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