Basic Information
VIS ID
TVIS10014166
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1824
Orient
-
Integrated sequence
TTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAG
Host Sequence
Chromosome
chr4
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
168911454/167990303 (Hg38)
End
168911454/167990303 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/2603966; hsa-mir-1305/Downstream/3195881;
Nearest TSS
ENST00000502981/Upstream/681514; ENST00000503003/Downstream/102212;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2116114, chr4-CpG: 27/Downstream/328095
Nearby gene
SPOCK3(-755713) ; ANXA10(+102234) ;
Upstream sequence
AATATTTTAAAAATCTTTAAAAAGGGTTGCACTGTTTAAAAACGTGGAATATTCTCTTGTAGGCAGTGTGGAGGCCATGGTCGCTGAGGAAGGGCAGGAG
Downstream sequence
CCTTTGGCATTTTAAAGTGCACCTGAATAAAAAGAATACATTATTTTCTTTTCAGGGATAGGTGAGACTTCAATAAAGCTGTTTAGTTCAAATTTGTCGT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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