Basic Information
VIS ID
TVIS10014183
Fusion event
HBV-chr6 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2301
Orient
+
Integrated sequence
CTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGA| |CCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAA
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
125849580/125528434 (Hg38)
End
125849580/125528434 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/5513177; hsa-mir-1202/Downstream/956197;
Nearest TSS
ENST00000381078/Upstream/83251; ENST00000423208/Downstream/145919;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/164715, chr6-CpG: 232/Downstream/219142
Nearby gene
HDDC2(-226298) ; LINC02523(+145919) ;
Upstream sequence
tggaactttctccaagacagaccatatgataggccacaaaacaagcctcaataaatttaagaaaattgaaattatggcaagcactctctcagaccacagt
Downstream sequence
ACTAggctagaacagtacatgtattatttaccattgcatcccctactgtgtccaacacagtgccctgaatttactgggtacagaacaaatgtttgatgaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate