Basic Information
VIS ID
TVIS10014219
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|middle S protein|
Start
35
Orient
+
Integrated sequence
AATTCCACAACCTTCCACCAAACTCTGCAAGATCC| |CAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGG
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
192472370/192503240 (Hg38)
End
192472370/192503240 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/12064850; hsa-mir-1182/Downstream/213088;
Nearest TSS
ENST00000473358/Upstream/110326; ENST00000642657/Downstream/13950;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5822291, chr1-CpG: 56/Downstream/305262
Nearby gene
RGS21(-135956) ; RGS1(+72487) ;
Upstream sequence
acatttttttcagcaccacaccacacctattccaaaattgaccacatacttggaagtaaagctctcctcagcaaatgtaaaagaacagaaattataacaa
Downstream sequence
actatctctcagaccacagtgcaatcaaactagaactcaggattaagaatctcactcaaagccactcaactacatggaaactgaacaacctgctcctgaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate