VISDB Viral Integration Site DataBase

VIS ID

TVIS10014330

Fusion event

HBV-PTPRJ integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

2222

Orient

-

Integrated sequence

TTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTG| |TCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTA

Chromosome

chr11

Cytoband

p11.2

Reference genome

Start

End

48067572/48046020 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-328-3p ; hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-16-5p ; hsa-mir-31-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-205-5p ; hsa-mir-92b-3p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-548c-3p ; hsa-mir-1277-5p ; hsa-mir-592 ; hsa-mir-376a-5p ; hsa-mir-4672 ; hsa-mir-597-5p ; hsa-mir-376a-2-5p ; hsa-mir-190b ; hsa-mir-190a-5p ; hsa-mir-936 ; hsa-mir-511-3p ; hsa-mir-5011-5p ; hsa-mir-6768-5p ; hsa-mir-4789-5p ; hsa-mir-3591-5p ; hsa-mir-190a-3p ; hsa-mir-142-3p ; hsa-mir-27b-5p ; hsa-mir-4280 ; hsa-mir-6516-3p ; hsa-mir-627-3p ; hsa-mir-3149 ; hsa-mir-1303 ; hsa-mir-5007-5p ; hsa-mir-505-3p ; hsa-mir-2278 ; hsa-mir-27a-5p ; hsa-mir-28-5p ; hsa-mir-299-3p ; hsa-mir-3139 ; hsa-mir-3158-3p ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-3688-5p ; hsa-mir-4265 ; hsa-mir-4266 ; hsa-mir-4296 ; hsa-mir-4322 ; hsa-mir-4417 ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-548au-3p ; hsa-mir-6132 ; hsa-mir-6501-3p ; hsa-mir-6510-5p ; hsa-mir-6721-5p ; hsa-mir-6836-5p ; hsa-mir-708-5p ; hsa-mir-7106-3p ; hsa-mir-891a-3p

Nearest miRNA

hsa-mir-129-2/Upstream/644978; hsa-let-7a-2/Downstream/50762;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/64402, chr11-CpG: 17/Downstream/834125

Nearest cancer related gene

PTPRJ(TSG, No orient, 0)

Upstream sequence

ATGGTTATTGCAACCATTTCAGAGTTTTCTTCTGTTTGTGATGTCATCTGTGCCTTATAAGGGGTGACTTgctaccttatggagcacctaggttgaggcc

Downstream sequence

cgggttgagcacagttccatacgttagctcatttatttattttgagacaggatctcacttctgtggcccagggtggagtgcagtggtgcaatcacagatc