SAMD4A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014342
Fusion event
HBV-SAMD4A integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1726
Orient
-
Integrated sequence
CGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTT| |AAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTT
Host Sequence
Chromosome
chr14
Cytoband
q22.2
Reference genome
End
55173992/54707274 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-208a/Upstream/758790; hsa-mir-1185-1/Downstream/170839;
Upstream sequence
ctcacagcagcatcaacctcctggactcaagcaatcctcccacctcagcctcttgagtatctgggaccacaggcatgcaccaccacacccagataatttt
Downstream sequence
tgtattttttgtggagacagggtctccctgtgttgcccaggctggtctcaaactcctgggctcaaataatcctcctgcgtaagcctcccaaagtgctggg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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