VISDB Viral Integration Site DataBase

VIS ID

TVIS10014355

Fusion event

HBV-UNKL integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1810

Orient

-

Integrated sequence

CAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCA| |GCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACAT

Chromosome

chr16

Cytoband

p13.3

Reference genome

Start

End

1429136/1379135 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-324-5p ; hsa-mir-125b-5p ; hsa-mir-148a-3p ; hsa-mir-93-5p ; hsa-mir-548c-3p ; hsa-mir-4668-3p ; hsa-mir-6513-3p ; hsa-mir-4280 ; hsa-mir-4282 ; hsa-mir-448 ; hsa-mir-153-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-3978 ; hsa-mir-5571-3p ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-4495 ; hsa-mir-8084 ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-8055 ; hsa-mir-129-5p ; hsa-mir-6807-5p ; hsa-mir-208b-5p ; hsa-mir-208a-5p

Nearest miRNA

hsa-mir-3176/Upstream/608858; hsa-mir-11401/Downstream/355850;

Nearest TSS

Nearest CpG islands

chr16-CpG: 116/Target, None/Upstream, None/Downstream

Upstream sequence

GGCTGCCTCAGCCCCGGGCGTTAGGAAACCACCGGCCCCGCTGAGTCACCGCGACACAGCCCGGCTCTGCCGTGACACAGCACATTCAAGGCGCCGCGGT

Downstream sequence

CCCCCGGGGTCAGGGACACGCGAGGACAAGCTACAGACTGCTCGGAACTCAGGACAGGGCGGGGGAGCCGCCGACGCCAGGGAAATTCCCGTACCACGCG