VISDB Viral Integration Site DataBase

VIS ID

TVIS10014373

Fusion event

HBV-ZNF558 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1801

Orient

-

Integrated sequence

GGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTC| |TGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGG

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

8930989/8820313 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-181a-5p ; hsa-mir-555 ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p

Nearest miRNA

hsa-mir-1227/Upstream/430933; hsa-let-7e/Downstream/1218041;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/121869, chr19-CpG: 59/Downstream/11719

Upstream sequence

gtctggcagttcctcaagaagctaaacacagacctagccttccactcctagtatatgcccaagaaaatggaaagtgggcatttaaacaaaagctcgtaca

Downstream sequence

caaaaattcatagtattatagcattattcttgatagtcaaagagtggaaacaactcaaatgtttctcaatagaaaaatggattggcaaaatgtggtatgt