Basic Information
VIS ID
TVIS10014378
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2030
Orient
+
Integrated sequence
GAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGA| |GTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTG
Host Sequence
Chromosome
chr2
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
126147567/125389990 (Hg38)
End
126147567/125389990 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/11668622; hsa-mir-10b/Downstream/2033547;
Nearest TSS
ENST00000437798/Upstream/1168285; ENST00000430692/Downstream/320979;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1364312, chr2-CpG: 51/Downstream/1266130
Nearby gene
CNTNAP5(-474704) ; GYPC(+1265944) ;
Upstream sequence
TGCCTCTATTTTTCTTTTTCTTTTTTTAAAATtttatttttttttaaattacactttaaattctagggtgcatgtgcacaatgtgcaggtttgttacata
Downstream sequence
ggtatatatgtaccatgttggtttgctgcacccattaactcatcatttacattaggtatttctcctaatgctatccctcctgctgcctcccaccccacaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate