PCLO _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014421
Fusion event
HBV-PCLO integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
precore/core protein|
Start
1841
Orient
+
Integrated sequence
TTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAAT| |CATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTG
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
End
82559836/82930520 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10525/Upstream/7015251; hsa-mir-10399/Downstream/9273495;
Upstream sequence
CAGAGGGAGGAAAGTGAGTTTGTGTTAAATCATATACTTTATGGATGTGTCTGTGCTTGCTACTCCAGGCAGGAGGTAAATGAATAAACAGAATAACAAT
Downstream sequence
ATTATCCAAGAGGTAAATGTTAGCATAACACAAAAATACTCAATTCATTTCTACAAAAGTAGAAACTAATGTTCAAAGAGGTTATAATAGAATGCATGAA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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