Basic Information
VIS ID
TVIS10014425
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2235
Orient
+
Integrated sequence
TCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGA| |AGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGG
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
32977960/33120442 (Hg38)
End
32977960/33120442 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/3163094; hsa-mir-10400/Downstream/8150606;
Nearest TSS
ENST00000518652/Upstream/124264; ENST00000519089/Downstream/240973;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/571059, chr8-CpG: 60/Downstream/352204
Nearby gene
NRG1(-355402) ; FUT10(+250384) ;
Upstream sequence
tgtgaccttcctctgggggaacactccactggtaagggaaaatcaccttaagcgagcatgcacacaaacttcagtaaacacactgtgtgtgtggcccctc
Downstream sequence
gctgttggaagggaggacaggttacttaacctctgtgagttctcatttccaagcagaacaaagaacataattatcaccacctcccagcattgtgtgaagt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate