VISDB Viral Integration Site DataBase

VIS ID

TVIS10014441

Fusion event

HBV-SNRNP40 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1726

Orient

-

Integrated sequence

CGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTT| |AAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTT

Chromosome

chr1

Cytoband

p35.2

Reference genome

Start

End

31769160/31296313 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-30c-5p

Nearest miRNA

hsa-mir-12136/Upstream/557081; hsa-mir-101-1/Downstream/462347;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/56348, chr1-CpG: 55/Downstream/86

Upstream sequence

AAGTCCCAAAACGAGCCAACACAAATCATTTCCCTTTTTTCTTCCCTCCCTCATTCATTCATTCTACACACTCTTCGGAATTTTTGTTCTATGCCAGATC

Downstream sequence

CATGTTAGAGTCAGGATGCTTAAACCCGGGTCAGGGTTTTGAGCCCAAGGTCCTCAACTCTAATTCTAATGCTATCTCAGGGCAGTCGAGAGGCTGAAAA