VISDB Viral Integration Site DataBase

VIS ID

TVIS10014461

Fusion event

HBV-FMN2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

261

Orient

+

Integrated sequence

GAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGG| |TGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTT

Chromosome

chr1

Cytoband

q43

Reference genome

Start

End

240314157/240150857 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-4738-3p ; hsa-mir-374c-3p ; hsa-mir-4282

Nearest miRNA

hsa-mir-101-1/Upstream/2679666; hsa-mir-3123/Downstream/981415;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/57094, chr1-CpG: 48/Downstream/56702

Upstream sequence

TTTATAAAGAGACTGGCCATAATAATTAGTAGAGAAGCATTGAGATCTAGGTATGATAAACTCTGAAATGCCTGCTCTTAACTGCTGTGTCTATTATGCA

Downstream sequence

GAAGTCCCTAAATGTATTTTGGAATAATCATTACAGGCTCTACATCCACACATGTTAGCATTTCACAGGTATGTTCAAAGGCAAAGAGATGATAGGTTTT