VISDB Viral Integration Site DataBase

VIS ID

TVIS10014464

Fusion event

HBV-SNIP1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

1138

Orient

+

Integrated sequence

GTGGTTATCCTGCGTTGATGCCTTTGTATGCATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATACCT| |GAACCTTTACCCCGTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATG

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

38018557/37552956 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-3613-3p ; hsa-mir-5089-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-301a-3p ; hsa-mir-3190-5p ; hsa-mir-3926 ; hsa-mir-4433a-3p ; hsa-mir-4786-5p ; hsa-mir-548s ; hsa-mir-5583-3p ; hsa-mir-6849-3p

Nearest miRNA

hsa-mir-12136/Upstream/51962; hsa-mir-101-1/Downstream/536275;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/37992, chr1-CpG: 30/Downstream/1049

Upstream sequence

CTCTGCCGGTCACATTAAAGGAGTCACGAGGTTCACTTTCCTAGCCCTAACATCTCCCTTGCATTCCATACTCACATAGACAACTGTCTACTGAACCTTC

Downstream sequence

TCACTTAGGTAACATAACTCTTAATTCCCAACCCTTCAAAAACCTTTCCTCTCCTACTCCTTGCCATCTCGCTGATTGGCATCACCATCCGTAAGTCACC