VISDB Viral Integration Site DataBase

VIS ID

TVIS10014466

Fusion event

HBV-CAMK1D integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

1196

Orient

+

Integrated sequence

TTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATACCTGAACCTTTACCCCGTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCA| |ACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTT

Chromosome

chr10

Cytoband

p13

Reference genome

Start

End

12807533/12765534 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6778-3p ; hsa-mir-6719-3p ; hsa-mir-150-5p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-323a-3p ; hsa-mir-562 ; hsa-mir-145-5p

Nearest miRNA

hsa-mir-3155a/Upstream/40181; hsa-mir-107/Downstream/1617666;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/414944, chr10-CpG: 78/Downstream/235560

Nearest cancer related gene

CAMK1D(OG, No orient, 0)

Upstream sequence

ggattcctgctaaaggcaggctaaggacttagacatTGACAAaggcccctttgagtcctctttctgattagaccctgctctctggctgtccagtaggtcc

Downstream sequence

agtttttagcaagaatcctgctgaatcagttgagctgaaatcttccacccgcgtgatctcatcagatccctaatgccTTtgaagtggcctcattgtctgg