Basic Information
VIS ID
TVIS10014474
Fusion event
HBV-chr11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|Polymerase|
Start
1396
Orient
+
Integrated sequence
TTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGC| |CAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTT
Host Sequence
Chromosome
chr11
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
128272197/128402302 (Hg38)
End
128272197/128402302 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-2/Upstream/1413760; hsa-mir-4697/Downstream/120088;
Nearest TSS
ENST00000527297/Upstream/190865; ENST00000525706/Downstream/61648;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1398388, chr11-CpG: 20/Downstream/49464
Nearby gene
KIRREL3-AS3(-1396244) ; ETS1(+56459) ;
Nearest cancer related gene
ETS1(OG, +56459) ;
Upstream sequence
ttctagttctcggatgtccattaatacaatctgagtttaagttgccatttttgatttcacaaatcactgctgatgcacatgaaactCAGCTAATTTTTTC
Downstream sequence
AACCCTGTTATTATGTAAGATACTTACTTAGATTGGAAATAGGTCCACAGCAACCAGCAACAACCACACTGCTCATGAGATTCTCCTGAAAAACAAGCTC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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