FAM155A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014481
Fusion event
HBV-FAM155A integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
974
Orient
+
Integrated sequence
TTTTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACACATCATACAAAAAATCAAAGAATGTTTTAGAAAACTTCCTATTAACAGGCCT| |ATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGCGTTGATGCCTTTGTATGCATGTA
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
108237941/107585593 (Hg38)
End
108237941/107585593 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM155A
Nearest miRNA
hsa-mir-1267/Upstream/54345; hsa-mir-4502/Downstream/2755365;
Nearest TSS
ENST00000623511/Upstream/681494; ENST00000622038/Downstream/281142;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/667270, chr13-CpG: 148/Downstream/281351
Upstream sequence
AGGCAAAGGAGAAAGCTTCTGTGTTTTTCTTTTCTTAAGGAAAAAATATGAAATATTGGACAAAATTCCAATGATGATGTTTTAGCCCAGCTTTGATTCA
Downstream sequence
TTTCAACAGCACCTTCTGGATGGCGGCTCCACTATGGGAAATTACCAGCCATTTATCATCACCTACTTCCTGCTTGCTGGGGCCTCATAACCCAGCTGAC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate