VISDB Viral Integration Site DataBase

VIS ID

TVIS10014482

Fusion event

HBV-LINC00346 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

1033

Orient

+

Integrated sequence

AAATCAAAGAATGTTTTAGAAAACTTCCTATTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTAC| |ACAATGTGGTTATCCTGCGTTGATGCCTTTGTATGCATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAA

Chromosome

chr13

Cytoband

q34

Reference genome

Start

End

111523444/110871097 (Hg38)

Orient

-

Location type

upstream

Target gene

miRNAs that regulate target gene

hsa-mir-1273e ; hsa-mir-6081 ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-6165 ; hsa-mir-562 ; hsa-mir-340-5p ; hsa-mir-5590-3p ; hsa-mir-555 ; hsa-mir-142-5p ; hsa-mir-32-3p ; hsa-mir-583 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-939-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-383-3p ; hsa-mir-6514-3p ; hsa-mir-222-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-564 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4797-3p ; hsa-mir-3129-5p ; hsa-mir-199b-3p ; hsa-mir-199a-3p ; hsa-mir-936 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-7160-5p ; hsa-mir-3160-3p ; hsa-mir-4684-5p ; hsa-mir-3675-3p ; hsa-mir-6771-3p ; hsa-mir-3190-5p ; hsa-mir-3614-5p ; hsa-mir-3681-5p ; hsa-mir-3926 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4786-5p ; hsa-mir-548s ; hsa-mir-6500-3p ; hsa-mir-6849-3p ; hsa-mir-6849-5p

Nearest miRNA

hsa-mir-1267/Upstream/530068; hsa-mir-4502/Downstream/2391823;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/57456, chr13-CpG: 24/Downstream/3539

Upstream sequence

tgtccacaaggaaattcctagtgagctccgcaatctttactgtaaggtgtttctgttaagatttcaccacagcaatgcaaatcgatagctcatctttaca

Downstream sequence

ggtgcagtcaacccctgcccgccagacacaaatgcaaacctgattgttcccctgccccctttgtctaagtcatcttgtgtaaaaataatgcagattcaat