Basic Information
VIS ID
TVIS10014483
Fusion event
HBV-chr13 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|Polymerase|
Start
1396
Orient
+
Integrated sequence
TTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGCTGC| |CAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTCGTCCCCTT
Host Sequence
Chromosome
chr13
Cytoband
q12.13
Reference genome
GRCh37/hg19
Start
27539424/26965287 (Hg38)
End
27539424/26965287 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/2802783; hsa-mir-1267/Downstream/12698747;
Nearest TSS
ENST00000623511/Upstream/204502; ENST00000440657/Downstream/26709;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/204511, chr13-CpG: 165/Downstream/205662
Nearby gene
GPR12(-204502) ; USP12(+100863) ;
Nearest cancer related gene
USP12(TSG, +100863) ;
Upstream sequence
CTGGCCCAGCCCAACCTCTGAGCCTCAGACCAGGAAATGTGAAACCAGGTGATGTGCACCTATCAAGTTGTGTCATGGTTCAAGACTTCCTCACTTCATG
Downstream sequence
AAAAGTTCCATAAAGGCCCTCCTCATTCTGTGTTAAATGAAAAATGAGCCAGTGTCCACAAGGAAGGGTGCCTCTTTTTAAAAATATTGCCATGATGgct
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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