hsa-mir-6826-3p _LIHC.png
hsa-mir-4659a-3p _LIHC.png
hsa-mir-6820-3p _LIHC.png
hsa-mir-892b _LIHC.png
hsa-mir-4434 _LIHC.png
hsa-mir-550a-3-5p _LIHC.png
DCAF7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014503
Fusion event
HBV-DCAF7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
382
Orient
+
Integrated sequence
GGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGT| |GTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCT
Host Sequence
Chromosome
chr17
Cytoband
q23.3
Reference genome
End
61628245/63550884 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-7-5p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-1229-3p ; hsa-mir-760 ; hsa-mir-326 ; hsa-mir-222-3p ; hsa-mir-26a-5p ; hsa-mir-18a-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-193a-3p ; hsa-mir-494-3p ; hsa-mir-588 ; hsa-mir-641 ; hsa-mir-875-3p ; hsa-mir-3190-5p ; hsa-mir-4252 ; hsa-mir-4261 ; hsa-mir-3617-5p ; hsa-mir-4701-5p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-590-3p ; hsa-mir-4282 ; hsa-mir-3681-3p ; hsa-mir-19a-3p ; hsa-mir-6748-5p ; hsa-mir-18b-5p ; hsa-mir-583 ; hsa-mir-1253 ; hsa-mir-1321 ; hsa-mir-3185 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-4735-3p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-6077 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6834-5p ; hsa-mir-6873-5p ; hsa-mir-7106-5p ; hsa-mir-9500 ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-513a-5p ; hsa-mir-3164 ; hsa-mir-3194-3p ; hsa-mir-5190 ; hsa-mir-5691 ; hsa-mir-6728-3p ; hsa-mir-6805-3p ; hsa-mir-6820-3p ; hsa-mir-6828-3p ; hsa-mir-6823-5p ; hsa-mir-573 ; hsa-mir-1262 ; hsa-mir-3175 ; hsa-mir-3616-5p ; hsa-mir-3665 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-4701-3p ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-4795-5p ; hsa-mir-5698 ; hsa-mir-5703 ; hsa-mir-6736-5p ; hsa-mir-6769a-5p ; hsa-mir-6770-5p ; hsa-mir-6794-5p ; hsa-mir-6769b-5p ; hsa-mir-6870-5p ; hsa-mir-6878-5p ; hsa-mir-7111-5p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-2355-5p ; hsa-mir-4683 ; hsa-mir-2861 ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-767-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-3918 ; hsa-mir-4512 ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-6864-3p ; hsa-mir-4799-5p ; hsa-mir-3672 ; hsa-mir-1200 ; hsa-mir-873-3p ; hsa-mir-4329 ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-5680 ; hsa-mir-1183 ; hsa-mir-605-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4778-3p ; hsa-mir-892b ; hsa-mir-6826-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-4269 ; hsa-mir-6715b-5p ; hsa-mir-6809-5p ; hsa-mir-657 ; hsa-mir-556-3p ; hsa-mir-335-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6832-3p ; hsa-mir-1248 ; hsa-mir-6868-3p ; hsa-mir-1237-3p ; hsa-mir-8057 ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-564 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-2276-3p ; hsa-mir-1304-3p ; hsa-mir-5693 ; hsa-mir-6890-3p ; hsa-mir-550b-2-5p ; hsa-mir-5006-5p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-6508-3p ; hsa-mir-4529-5p ; hsa-mir-4755-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-6889-3p ; hsa-mir-6884-3p ; hsa-mir-665 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-6895-5p ; hsa-mir-548p
Nearest miRNA
hsa-mir-10226/Upstream/606572; hsa-mir-1250/Downstream/949890;
Nearest CpG islands
chr17-CpG: 90/Target, None/Upstream, None/Downstream
Upstream sequence
GGGCAGCTTCGTGGAGGAGTACAACAACAAGGTGGGCCGGGCAGGGGCTCGGAACCCAGCTGGCGGGGAGCGGGCCCCGGGAGCGCCCTTTCCGGGCCGG
Downstream sequence
AGCCCAGGCCTCAGAACCCTCTTGCGGACTCGCCCTAGGGCCACGgagcggttcctctgtctggccctgtgctgaaggtttcgtactcgttgtctgtctc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate