Basic Information
VIS ID
TVIS10014543
Fusion event
HBV-MIR548AJ2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|Polymerase|
Start
2349
Orient
+
Integrated sequence
AGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTTGTT| |AGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAAT
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
23358829/23357206 (Hg38)
End
23358829/23357206 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA4D
Target gene
MIR548AJ2
Nearest miRNA
hsa-mir-12113/Upstream/841821; hsa-mir-1243/Downstream/1162986;
Nearest TSS
ENST00000502981/Upstream/71633; ENST00000499715/Downstream/203717;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/840781, chr4-CpG: 266/Downstream/1112871
Upstream sequence
CCCCTAACAGGAAAATGAGAATCAGGTATTATCTTAAAGTATCCATCTTCCACAACAGAAAGGAGCAAATGGCATGGTGGTTCTGTTAGGACAGAACACT
Downstream sequence
tgctagtcatctgcatttttttgtaagtaaatatattttggaacacggttctgtctattctttaagtatcatccatgggtgcttatcagtacgaaggcag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate