EYS _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10014557
Fusion event
HBV-EYS integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|Polymerase|
Start
1379
Orient
+
Integrated sequence
ACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGG| |CTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGG
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
End
66056070/65346177 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10398/Upstream/7955965; hsa-mir-10524/Downstream/6030783;
Upstream sequence
AGGGCCGGCATTAGGGGGAGGAAGGCAGATGAGAGGAGAGGAAGCTATACCAGTAACTTTTTAAACGAATGGCAAAAAGACCTTTTCTATTTTAGATTTC
Downstream sequence
agtcatcatggcccatccttgtatggtcagtttccagtcagccttcttagttcctctccgttaaatatgatcaccccacatttggcagaaagactccaaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate